Aminoacidsequence.png

AminoAcidSequence is a resource derived from Sequence, and contains following information:


1. Basic info of the sequence
2. Gene that the sequence relates to
3. Trait resulted from having the sequence





RESOURCE PROFILE:
<AminoAcidSequence>
    <patient><!--1..1 Resource(patient) Owner of this AminoAcidSequence--></patient>
    <sequence><!--1..1 Resource(sequence) Amino acid read of this sequence--></sequence>
    <relatedGene><!--0..1 Resource(gene) Gene that this sequence translated from--></relatedGene>
    <function><!--0..1 CodeableConcept Function related to this protein-->
        <effect value="[boolean]"/><!--1..1 Effects of the protein on the function:[promotes/inhibits/uncertain]-->
        <ontology><!--1..1 CodeableConcept Ontology for this function--></ontology>
    </function>
</AminoAcidSequence>

EXAMPLE IN:XML JSON

XML
<?xml version="1.0" encoding="UTF-8"?>
<AminoAcidSequence>
    <text>
        <status value="generated"/>
        <div xmlns="http://www.w3.org/1999/xhtml">
            <p>Amino acid seqeunce stranslated from region chr11:150-23450 for patient 123</p>
        </div>
    </text>
    <contained>
        <type value="Patient"/>
        <url value="../patient/123"/>
        <display value="John Doe"/>
    </contained>
    <contained>
        <type value="Sequence"/>
        <url value="../sequence/256"/>
    </contained>
    <contained>
        <type value="Gene"/>
        <url value="../gene/chr11_150_23450"/>
        <display value="HBB"/>
    </contained>
    <patient>
        <type value="Patient"/>
        <url value="../patient/123"/>
    </patient>
    <sequence>
        <type value="Sequence"/>
        <url value="../sequence/231"/>
    </sequence>
    <relatedGene>
        <type value="Gene"/>
        <url value="../gene/478"/>
        <display value="HBB"/>
    </relatedGene>
    <function>
        <effect value="uncertain"/>
        <ontology>
            <coding>
                <system value="http://purl.bioportal.org/ontologies/SNOMEDCT" />
                    <code value="35434009"/>
                </coding>
            <text value="Sickle cell-hemoglobin C disease"/>
        </ontology>
    </function>
</AminoAcidSequence>


JSON
    "AminoAcidSequence": {
        "text": {
            "status": {
                "value": "generated"
            },
        "div" : "<div xmlns='http://www.w3.org/1999/xhtml'><p>Amino acid seqeunce stranslated from region chr11:150-23450 for patient 123</p></div"
        },
        "contained": [
            {
                "url": {
                    "value": "../patient/123"
                },
                "type": {
                    "value": "Patient"
                },
                "display": {
                    "value": "John Doe"
                }
            },
            {
                "url": {
                    "value": "../sequence/256"
                },
                "type": {
                    "value": "Sequence"
                }
            },
            {
                "url": {
                    "value": "../gene/chr11_150_23450"
                },
                "type": {
                    "value": "Gene"
                },
                "display": {
                    "value": "HBB"
                }
            }
        ],
        "patient": {
            "url": {
                "value": "../patient/123"
            },
            "type": {
                "value": "Patient"
            }
        },
        "sequence": {
            "url": {
                "value": "../sequence/231"
            },
            "type": {
                "value": "Sequence"
            }
        },
        "function": {
            "ontology": {
                "text": {
                    "value": "Sickle cell-hemoglobin C disease"
                },
                "coding": {
                    "code": {
                        "value": "35434009"
                    },
                    "system": {
                        "value": "http://purl.bioportal.org/ontologies/SNOMEDCT"
                    }
                }
            },
            "effect": {
                "value": "uncertain"
            }
        },
        "relatedGene": {
            "url": {
                "value": "../gene/478"
            },
            "type": {
                "value": "Gene"
            },
            "display": {
                "value": "HBB"
            }
        }
    }